A biological substance quantification method of quantifying an expression amount of a specific biological substance in a target sample that is stained by using a fluorescent dye accumulated particle bondable to the specific biological substance, the method comprising:
- inputting a first fluorescent image obtained by image capturing of the target sample;
- luminance calculating comprising extracting a bright spot portion from the first fluorescent image and calculating a first luminance value which is a luminance value of the bright spot portion;
- particle number calculating comprising calculating a number of the fluorescent dye accumulated particle included in the bright spot portion extracted from the first fluorescent image by using the first luminance value, a second luminance value and a distribution of a third luminance value, the second luminance value being a luminance value of a bright spot portion extracted from a second fluorescent image obtained by image capturing of a standard sample for which an expression amount of the specific biological substance is measured in advance, and the third luminance value being a luminance value of each bright spot portion representing light emission of the fluorescent dye accumulated particle in a third fluorescent image obtained by image capturing of a preparation on which the fluorescent dye accumulated particle is dispersed without aggregating;
- each of the bright spot portion is a region where the fluorescent dye accumulated particle exists, the first luminance value is a first luminance integrated value that is an integrated value of the luminance value of the bright spot portion extracted from the first fluorescent image, the second luminance value is a second luminance integrated value that is an integrated value of the luminance value of the bright spot portion extracted from the second fluorescent image, and the third luminance value is a third luminance integrated value that is an integrated value of the luminance value of the bright spot portion extracted from the third fluorescent image;
- a unit luminance value calculating comprising calculating a unit luminance value per the fluorescent dye accumulated particle from the distribution of the third luminance integrated value adding up the luminance value of each of the bright spot portion representing the light emission of the fluorescent dye accumulated particle in the third fluorescent image;
- a tentative particle number calculating comprising calculating a tentative number of the fluorescent dye accumulated particle included in the bright spot portion extracted from the first fluorescent image by using a first luminance integrated value and the unit luminance value;
- and
- a particle number correcting comprising correcting the tentative number of the fluorescent dye accumulated particle included in the bright spot portion extracted from the first fluorescent image by using the second luminance integrated value.