The disclosure relates to USP30 Inhibitor Compounds I, pharmaceutically acceptable salts thereof, pharmaceutical compositions comprising same, and medical uses involving same. (I)
Drawings
Claims21
A compound of formula (I):
or a pharmaceutically acceptable salt thereof, wherein
Ra, Rb, Rc, Rd, Re, Rf, Rg, and Rh are defined as follows:
(i) Ra and Rb form a C1-C4 alkylene group between the atoms to which they are attached, wherein said C1-C4 alkylene group is substituted with 0-4 substituents selected from the group consisting of halogen, C1-C3 alkyl, and C1-C3 haloalkyl;
and Rc, Rd, Re, Rf, Rg, and Rh are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
or
(ii) Ra and Re form a C1-C2 alkylene group between the atoms to which they are attached, wherein said C1-C2 alkylene group is substituted with 0-4 substituents selected from the group consisting of halogen, C1-C3 alkyl, and C1-C3 haloalkyl;
and Rb, Rc, Rd, Rf, Rg, and Rh are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
or
(iii) Ra and Rg form a C1-C3 alkylene group between the atoms to which they are attached, wherein said C1-C3 alkylene group is substituted with 0-4 substituents selected from the group consisting of halogen, C1-C3 alkyl, and C1-C3 haloalkyl;
and Rb, Rc, Rd, Re, Rf, and Rh are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
or
(iv) Rb and Rc form a C1-C4 alkylene group between the atoms to which they are attached, wherein said C1-C4 alkylene group is substituted with 0-4 substituents selected from the group consisting of halogen, C1-C3 alkyl, and C1-C3 haloalkyl;
and Ra, Rd, Re, Rf, Rg, and Rh are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
or
(v) Rb and Re form a C1-C3 alkylene group between the atoms to which they are attached, wherein said C1-C3 alkylene group is substituted with 0-4 substituents selected from the group consisting of halogen, C1-C3 alkyl, and C1-C3 haloalkyl;
and Ra, Rc, Rd, Rf, Rg, and Rh are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
or
(vi) Rb and Rg form a C1-C4 alkylene group between the atoms to which they are attached, wherein said C1-C4 alkylene group is substituted with 0-4 substituents selected from the group consisting of halogen, C1-C3 alkyl, and C1-C3 haloalkyl;
and Ra, Rc, Rd, Re, Rf, and Rh are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
or
(vii) Rc and Rd, together with the atom to which they are attached, form a 3-6 membered cycloalkyl or heterocycloalkyl, wherein said 3-6 membered cycloalkyl or heterocycloalkyl is substituted with 0-4 substituents selected from the group consisting of halogen, C1-C3 alkyl, and C1-C3 haloalkyl;
and Ra, Rb, Re, Rf, Rg, and Rh are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
or
(viii) Rc and Rd together form ═O;
and Ra, Rb, Re, Rf, Rg, and Rh are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
or
(ix) Rc and Re form a C1-C4 alkylene group between the atoms to which they are attached, wherein said C1-C4 alkylene group is substituted with 0-4 substituents selected from the group consisting of halogen, C1-C3 alkyl, and C1-C3 haloalkyl;
and Ra, Rb, Rd, Rf, Rg, and Rh are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
or
(x) Rc and Rg form a C1-C3 alkylene group between the atoms to which they are attached, wherein said C1-C3 alkylene group is substituted with 0-4 substituents selected from the group consisting of halogen, C1-C3 alkyl, and C1-C3 haloalkyl;
and Ra, Rb, Rd, Re, Rf, and Rh are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
or
(xi) Re and Rf, together with the atom to which they are attached, form a 3-6 membered cycloalkyl or heterocycloalkyl, wherein said 3-6 membered cycloalkyl or heterocycloalkyl is substituted with 0-4 substituents selected from the group consisting of halogen, C1-C3 alkyl, and C1-C3 haloalkyl;
and Ra, Rb, Rc, Rd, Rg, and Rh are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
or
(xii) Re and Rf together form ═O;
and Ra, Rb, Rc, Rd, Rg and Rh are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
or
(xiii) Re and Rg form a C1-C3 alkylene group between the atoms to which they are attached, wherein said C1-C3 alkylene group is substituted with 0-4 substituents selected from the group consisting of halogen, C1-C3 alkyl, and C1-C3 haloalkyl;
and Ra, Rb, Rc, Rd, Rf, and Rh are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
or
(xiv) Rg and Rh, together with the atom to which they are attached, form a 3-6 membered cycloalkyl or heterocycloalkyl, wherein said 3-6 membered cycloalkyl or heterocycloalkyl is substituted with 0-4 substituents selected from the group consisting of halogen, C1-C3 alkyl, and C1-C3 haloalkyl;
and Ra, Rb, Rc, Rd, Re, and Rf are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
or
(xv) Rg and Rh together form ═O;
and Ra, Rb, Rc, Rd, Re, and Rf are each independently hydrogen, halogen, C1-C3 alkyl, or C1-C3 haloalkyl;
and
Ar1 is phenylene or 5-6 membered heteroarylene, wherein said phenylene or heteroarylene is substituted with m R1 groups;
and
Ar2 is phenylene or 5-6 membered heteroarylene, wherein said phenylene or heteroarylene is substituted with n R2 groups;
L is —O—, —S—, —NR3—, —C(R4)2—, —S(O)2—, or —S(O)—;
M is 3-6 membered cycloalkyl, phenyl, or 5-6 membered heteroaryl, wherein said cycloalkyl, phenyl, or heteroaryl is substituted with p R5 groups;
each R4 is independently H, C1-C6 alkyl, or C1-C6 haloalkyl, or two R4 groups together with the carbon atom to which they are attached form a 3-6 membered cycloalkyl or heterocycloalkyl;
17/282,521Filed 4 Oct 2019 · us provisional application
Priority
5 Oct 2018
Published
US 2021/0355126 A118 Nov 2021
Granted
27 Dec 2022
Term ends
4 Oct 2039Estimated · howhide20 years from earliest known nonprovisional domestic filing plus recorded patent term adjustment. Maintenance-fee lapses, terminal disclaimers and statutory extensions have not been checked. The continuity chain may be incomplete; this is not an enforceability determination.
Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a…:…
Life of this patent
About 12 years 11 months of term left · ends 4 Oct 2039 (estimated)
Priority5 Oct 2018
Filed4 Oct 2019
Published18 Nov 2021
Granted27 Dec 2022
Today12 Oct 2026
Term ends4 Oct 2039
Priority5 Oct 2018
Granted27 Dec 2022
Term ends4 Oct 2039
Priority claimedParent application 62/741,945
Application filedUS 17/282,521
Assigned to Forma Therapeutics, Inc.assignment of assignor's interest
PublishedUS 2021/0355126 A1
GrantedUS 11,535,618 B2
TodayWithin its term
Term endsEstimated
Description26,794 words
Summary1,711 words
#This disclosure relates to inhibiting Ubiquitin-Specific Protease 30 (USP30), including novel compounds and methods for inhibiting USP30. The compounds and related methods are useful in the field of medicine including the development of new therapies (e.g., for the treatment of conditions related to the therapeutic inhibition of USP30 such as Parkinson's Disease (PD)).
#The ubiquitination system is a highly regulated process which affects a wide variety of cellular activities and physiological processes. Ubiquitination is a reversible process, facilitated by a group of proteins known as deubiquitinating enzymes (DUBs), which deconjugate ubiquitin (Ub) from the substrate. DUBs are encoded by approximately 100 human genes and are divided into six families, with the largest family being the ubiquitin-specific proteases (USPs) with more than 50 members.
#Ubiquitination regulates mitochondrial dynamics and biogenesis, affecting the abundance and function of these organelles. Mitochondria serve many functions to maintain cell health in mammals, including generating ATP. As mitochondria age they become damaged, losing their metabolic functionality, and begin releasing pro-apoptotic proteins. Mitochondria self-regulate their quality via the mechanism of mitophagy, which is the selective removal of damaged mitochondria from the cell. Ubiquitination of mitochondrial proteins is believed to contribute to mitochondrial dynamics in mammalian cells, possibly by “flagging” those proteins for inactivation. Ubiquitin-Specific Protease 30 (USP30) is embedded in the outer membrane of mitochondria, where it participates in the maintenance of mitochondrial morphology. It is believed that over-expression of USP30 can lead to a decrease in mitophagy.
Detailed description25,083 words
#The present disclosure relates to compounds of formula (I), as defined herein, pharmaceutically acceptable salts thereof, pharmaceutical compositions comprising same, and medical uses involving same. In some embodiments, the compounds of formula (I) are USP30 Inhibitor Compounds. In other embodiments, the compounds of formula (I) are useful, for example, as analytical tools and/or control compounds in biological assays (e.g., compounds of any of the following aspects and embodiments that are not USP30 Inhibitor Compounds).
#USP30 Inhibitor Compounds are useful in the development of new therapies for Parkinson's disease (PD), and in methods of treating diseases or conditions by inhibiting USP30 (such as PD). Parkin (E3 ubiquitin ligase) and PINK1 (kinase) are key regulators of mitophagy. In healthy mitochondria, PINK1 localization to the mitochondrial outer membrane (MOM) and exposure to the cytosol is limited by rapid import to the mitochondrial inner membrane (MIM). Once localized to the MIM, PINK1 is processed by several proteases, such as presenilin associated rhomboid-like protease (PARL), to yield a truncated version of PINK1 which is subsequently degraded by the proteasome (Meissner et al., Autophagy. 2015, 11(9), 1484-1498). Upon mitochondrial depolarization or dysfunction, PINK1 accumulates in the MOM, recruiting and activating Parkin via PINK1-dependent phosphorylation of both ubiquitin and Parkin. Consequently, activated Parkin ubiquitinates MOM proteins like TOMM20 to trigger mitophagy (Pickrell et al., Neuron. 2015, 85(2), 257-273). USP30 is embedded in the MOM with its catalytic DUB domain oriented towards the cytosol and has been shown to antagonize Parkin-mediated ubiquitination of common substrates, consequently opposing Parkin-mediated mitophagy. Genetic silencing of USP30 results in increased ubiquitination of several Parkin substrates followed by increased mitophagy. In model organisms, USP30 depletion is able to rescue mitophagy defects caused by pathogenic Parkin mutations, as well as restore mitochondria morphology and function, and dopamine levels. (Nakamura, et al., Mol Biol Cell. 2008, 19(5), 1903-1911; Bingol, et al., Nature 2014, 510(7505):370-5). Therefore, inhibition of USP30 with a compound disclosed herein could present a novel treatment paradigm for PD by promoting mitochondrial turnover.