Signal extraction for a target nucleic acid sequence
AssigneeSeegene, Inc.
InventorsJong Yoon Chun, Young Jo Lee, Han Bit Lee
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Abstract
The present invention relates to extraction of a signal for a target nucleic acid sequence from signals for two target nucleic acid sequences in a sample. The present invention can contribute to dramatic improvement in methods for detecting target nucleic acid sequences using different detection temperatures and reference values. The present invention using an amended reference value as well as an initial reference value can lead to increasing the detection accuracy in methods for detecting target nucleic acid sequences using different detection temperatures and reference values.
Claims22
A method for extracting a signal for a target nucleic acid sequence from signals for two target nucleic acid sequences in a sample, comprising:
- (a) incubating the sample with a first signal-generating means capable of generating a signal for a first target nucleic acid sequence and a second signal-generating means capable of generating a signal for a second target nucleic acid sequence in a single reaction vessel, and detecting signals at a relatively high detection temperature and a relatively low detection temperature by the single type of detector;
- wherein the incubation is performed by a signal-generating process;
- wherein the detection is performed at one or more cycles of the signal-generating process to obtain a signal value at each of the one or more cycles;
- and wherein the two signals to be generated by the two signal-generating means are not differentiated by a single type of detector;
- (b) processing the signal values obtained in the step (a) by:
- using a second initial reference value to extract the signal for the first target nucleic acid sequence;
- or
- using a first initial reference value to extract the signal for the second target nucleic acid sequence;
- wherein the first initial reference value is a value representing a relationship of change in signals provided by the first signal-generating means at the relatively high detection temperature and the relatively low detection temperature, and the second initial reference value is a value representing a relationship of change in signals provided by the second signal-generating means at the relatively high detection temperature and the relatively low detection temperature;
- and wherein the first initial reference value is predetermined from a control reaction using the first target nucleic acid sequence and the first signal-generating means and the second initial reference value is predetermined from a control reaction using the second target nucleic acid sequence and the second signal-generating means;
- and
- (c) identifying whether the extracted signal satisfies an accuracy criterion;
- when the extracted signal does not satisfy the accuracy criterion, the step (b) is repeated, using an amended reference value instead of the initial reference value to re-extract the signal for the first target nucleic acid sequence or the second target nucleic acid sequence;
- wherein the amended reference value is determined such that the re-extracted signal satisfies the accuracy criterion.
A computer readable storage medium containing instructions to configure a processor to perform a method for extracting a signal for a target nucleic acid sequence from signals for two target nucleic acid sequences comprising a first target nucleic acid sequence and a second target nucleic acid sequence in a sample, the method comprising:
- (a) receiving signals from the sample at a relatively high detection temperature and a relatively low detection temperature;
- wherein the first target nucleic acid sequence in the sample is detected by a first signal-generating means and the second target nucleic acid sequence in the sample is detected by a second signal-generating means;
- wherein the detection is performed at one or more cycles of the signal-generating process to obtain a signal value at each of the one or more cycles;
- and wherein the two signals to be generated by the two signal-generating means are not differentiated by a single type of detector;
- (b) mathematically processing the signal values obtained in the step (a) by:
- using a second initial reference value to extract the signal for the first target nucleic acid sequence, or
- using a first initial reference value to extract the signal for the second target nucleic acid sequence;
- wherein the first initial reference value is a value representing a relationship of change in signals provided by the first signal-generating means at the relatively high detection temperature and the relatively low detection temperature, and the second initial reference value is a value representing a relationship of change in signals provided by the second signal-generating means at the relatively high detection temperature and the relatively low detection temperature;
- and wherein the first initial reference value is predetermined from a separate reaction using the first target nucleic acid sequence and the first signal-generating means and, the second initial reference value is predetermined from a separate reaction using the second target nucleic acid sequence and the second signal-generating means;
- and
- (c) identifying whether the extracted signal satisfies an accuracy criterion;
- when the extracted signal does not satisfy the accuracy criterion, the step (b) is repeated using an amended reference value instead of the initial reference value to re-extract the signal for the first target nucleic acid sequence or the second target nucleic acid sequence;
- wherein the amended reference value is determined such that the re-extracted signal satisfies the accuracy criterion.
A computer program to be stored on a computer readable storage medium to configure a processor to perform a method for extracting a signal for a target nucleic acid sequence from signals for two target nucleic acid sequences comprising a first target nucleic acid sequence and a second target nucleic acid sequence in a sample, the method comprising:
- (a) receiving signals from the sample at a relatively high detection temperature and a relatively low detection temperature;
- wherein the first target nucleic acid sequence in the sample is detected by a first signal-generating means and the second target nucleic acid sequence in the sample is detected by a second signal-generating means;
- wherein the detection is performed at one or more cycles of the signal-generating process to obtain a signal value at each of the one or more cycles;
- and wherein the two signals to be generated by the two signal-generating means are not differentiated by a single type of detector;
- (b) processing the signal values obtained in the step (a) by:
- using a second initial reference value to extract the signal for the first target nucleic acid sequence, or using a first initial reference value to extract the signal for the second target nucleic acid sequence;
- wherein the first initial reference value is a value representing a relationship of change in signals provided by the first signal-generating means at the relatively high detection temperature and the relatively low detection temperature, and the second initial reference value is a value representing a relationship of change in signals provided by the second signal-generating means at the relatively high detection temperature and the relatively low detection temperature;
- and
- wherein the first initial reference value is predetermined from a separate reaction using the first target nucleic acid sequence and the first signal-generating means and the second initial reference value is predetermined from a separate reaction using the second target nucleic acid sequence and the second signal-generating means;
- and
- (c) identifying whether the extracted signal satisfies an accuracy criterion;
- when the extracted signal does not satisfy the accuracy criterion, the step (b) is repeated using an amended reference value instead of the initial reference value to re-extract the signal for the first target nucleic acid sequence or the second target nucleic acid sequence;
- wherein the amended reference value is determined such that the re-extracted signal satisfies the accuracy criterion.
Dependencies are inferred from the claim text.