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US 11,479,797 B2Granted
Compositions and methods for the production of compounds
AssigneeGinkgo Bioworks, Inc.
InventorsDaniel C. Gray, Brian R. Bowman, Gregory L. Verdine, Mathew Edward Sowa
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Abstract
The present disclosure provides proteins, nucleic acids, vectors, and host molecules useful for the production of compounds of interest, and methods for their use.
Claims15
A method of producing a compound, the method comprising:
- (a) providing a parent nucleic acid encoding a parent polyketide synthase;
- (b) modifying at least a first codon of a ketoreductase domain of the parent nucleic acid to produce a modified nucleic acid encoding a modified polyketide synthase capable of producing a compound, wherein modifying the first codon produces a modified ketoreductase domain comprising at least one of the following modifications:
- (i) a substitution of an amino acid other than tyrosine at a position corresponding to a tyrosine in a conserved YAAAN (SEQ ID NO:
- 97) catalytic motif and a deletion of a region corresponding to a conserved αFG helix of SEQ ID NO:
- 1,
- (ii) a substitution of a glutamic acid residue at a position corresponding to alanine 6632 of an S9-pksA ORF of SEQ ID NO:
- 2, or
- (iii) a deletion of amino acids corresponding to amino acids 3386 to 3516 of a WT S12-pksB ORF of SEQ ID NO:
- 3;
- and
- wherein the one or more modifications decrease the enzymatic activity of the modified ketoreductase domain in comparison to the enzymatic activity of the ketoreductase domain of the parent polyketide synthase
- (c) introducing the modified nucleic acid to one or more host cells;
- and
- (d) culturing the one or more host cells under conditions suitable to allow expression of the compound by the modified polyketide synthase;
- thereby producing the compound.
12 more elements
Dependencies are inferred from the claim text.