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US 11,390,641 B2Granted
5′S-LNA nucleotides and oligonucleotides
AssigneeHoffmann-La Roche Inc.
InventorsKonrad Bleicher, Joerg Duschmalé, Goutam Saha, Juber Abdulhamid Shaikh
Life of this patent
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Abstract
The invention relates to a compound of formula (I) wherein R2 and R4 are joined and together form a group, such a —CH2O—. The compound of formula (I) can be used in the manufacture of 5′S-LNA oligonucleotides as antisense drugs.
Claims30
A compound of formula (I)
- wherein
- R1 is a phosphate protecting group;
- R2 and R4 together form —CH2O—, —CH2NH—, —CH2S—, —CH2N(ORp)—, —CHCH3O—,C(CH3)2O, —CH2C(═CH2)—, —CHCH3C(═CH2)—, —CHCH3S—, —CH2NRp—, —CH2CH2O—, —CH2CH2CH2O—, —CH2OCH2—, —CH(CH2OCH3)O—, —CH(CH2CH3)O— or —CH2OCH2O—;
- R3 is dialkylamino;
- R5 is a thiohydroxyl protecting group;
- each Rp is alkyl;
- and
- Nu is a nucleobase optionally comprising a protected primary amino group.
5 more elements
A process for the manufacture of a compound of formula (I),
- comprising reacting a compound of formula (II)
- with P(R3)2OR1 in the presence of an oligonucleotide synthesis activator, wherein
- R1 is a phosphate protecting group;
- R2 and R4 together form —CH2O—, —CH2NH—, —CH2S—, —CH2N(ORp)—, —CHCH3O—,C(CH3)2O, —CH2C(═CH2)—, —CHCH3C(═CH2)—, —CHCH3S—, —CH2NRp—, —CH2CH2O—, —CH2CH2CH2O—, —CH2OCH2—, —CH(CH2OCH3)O—, —CH(CH2CH3)O— or —CH2OCH2O—;
- R3 is dialkylamino;
- R5 is a thiohydroxyl protecting group;
- Nu is a nucleobase optionally comprising a protected primary amino group;
- and each Rp is independently alkyl.
5 more elements
A compound selected from
- N-(9-{1-[(benzoylsulfanyl)methyl]-7-hydroxy-2,5-dioxabicyclo[2.2.1]heptan-3-yl}-9H-purin-6-yl)benzamide;
- N-{9-[7-hydroxy-1-(sulfanylmethyl)-2,5-dioxabicyclo[2.2.1]heptan-3-yl]-9H-purin-6-yl}benzamide;
- N-{9-[1-({[bis(4-methoxyphenyl)(phenyl)methyl]sulfanyl}methyl)-7-hydroxy-2,5-dioxabicyclo[2.2.1]heptan-3-yl]-9H-purin-6-yl}benzamide;
- 1-[1-({[bis(4-methoxyphenyl)(phenyl)methyl]sulfanyl}methyl)-7-hydroxy-2,5-dioxabicyclo[2.2.1]heptan-3-yl]-5-methyl-1,2,3,4-tetrahydropyrimidine-2,4-dione;
- N′-(9-{1-[(benzoylsulfanyl)methyl]-7-hydroxy-2,5-dioxabicyclo[2.2.1]heptan-3-yl}-6-oxo-6,9-dihydro-1H-purin-2-yl)-N,N-dimethylmethanimidamide;
- N′-{9-[7-hydroxy-1-(sulfanylmethyl)-2,5-dioxabicyclo[2.2.1]heptan-3-yl]-6-oxo-6,9-dihydro-1H-purin-2-yl}-N,N-dimethylmethanimidamide;
- N′-{9-[1-({[bis(4-methoxyphenyl)(phenyl)methyl]sulfanyl}methyl)-7-hydroxy-2,5-dioxabicyclo[2.2.1]heptan-3-yl]-6-oxo-6,9-dihydro-1H-purin-2-yl}-N,N-dimethylmethanimidamide;
- N-(1-{1-[(benzoylsulfanyl)methyl]-7-hydroxy-2,5-dioxabicyclo[2.2.1]heptan-3-yl}-5-methyl-2-oxo-1,2-dihydropyrimidin-4-yl)benzamide;
- N-{1-[7-hydroxy-1-(sulfanylmethyl)-2,5-dioxabicyclo[2.2.1]heptan-3-yl]-5-methyl-2-oxo-1,2-dihydropyrimidin-4-yl}benzamide and;
- N-{1-[1-({[bis(4-methoxyphenyl)(phenyl)methyl]sulfanyl}methyl)-7-hydroxy-2,5-dioxabicyclo[2.2.1]heptan-3-yl]-5-methyl-2-oxo-1,2-dihydropyrimidin-4-yl}benzamide.
7 more elements
An oligonucleotide comprising a fragment of formula (IX)
- wherein
- R2 and R4 together form —CH2NH—, —CH2S—, —CH2N(ORp)—, —CHCH3O—, —C(CH3)2O—, —CH2C(═CH2)—, —CHCH3C(═CH2)—, —CHCH3S—, —CH2NRp—, —CH2CH2O—, —CH2CH2CH2O—, —CH2OCH2—, —CH(CH2OCH3)O—, —CH(CH2CH3)O— or —CH2OCH2O—;
- wherein each Rp is alkyl;
- and
- Nu is a nucleobase optionally comprising a protected primary amino group.
2 more elements
Dependencies are inferred from the claim text.