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US 11,324,787 B2Granted
Analytical methods and arrays for use in the same
AssigneeSenzagen AB
InventorsMalin Marie Lindstedt, Carl A. K. Borrebaeck, Henrik Johansson, Ann-Sofie Albrekt, Kathrin Stephanie Zeller, Aakash Chawade, Tim Carl Sewe Lindberg, Andy Andreas Sebastian Forreryd
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Abstract
The present invention relates to a method for identifying the skin sensitizer potency of a test agent, and arrays and analytical kits for use in such methods.
Claims3
An in vitro method for measuring biomarkers for human skin sensitizers consisting of the steps of:
- a) exposing a population of dendritic cells or a population of dendritic-like cells to a test agent;
- and
- b) measuring in the exposed cells of step a) the expression of nucleic acid molecules encoding each of the following 51 biomarkers for human skin sensitizers:
- histone cluster 1, H2bm (HIST1H2BM);
- histone cluster 1, H4b (HIST1H4B);
- histone cluster 1, H1d (HIST1H1D);
- phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase (PAICS);
- histone cluster 1, H4d (HIST1H4D);
- histone cluster 1, H2a1/histone cluster 1, H2bn (HIST1H2AL/HIST1H2BN);
- polo-like kinase 1 (PLK1);
- phosphoglycerate dehydrogenase (PHGDH);
- minichromosome maintenance complex component 2 (MCM2);
- minichromosome maintenance complex component 7 (MCM7);
- CD53;
- kinesin family member C1 (KIFC1);
- WEE1 G2 checkpoint kinase (WEE1);
- thymopoietin (TMPO);
- minichromosome maintenance complex component 4 (MCM4);
- proline/serine-rich coiled-coil 1 (PSRC1);
- ring finger protein 149 (RNF149);
- minichromosome maintenance complex component 6 (MCM6);
- minichromosome maintenance complex component 5 (MCM5);
- Fanconi anemia complementation group A (FANCA);
- carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase (CAD);
- MRT4 homolog, ribosome maturation factor (MRTO4);
- target of EGR1, member 1 (TOE1);
- cell division cycle 20 (CDC20);
- peptidase M20 domain containing 2 (PM20D2);
- NmrA-like family domain containing 1 pseudogene (LOC344887);
- uracil DNA glycosylase (UNG);
- cyclin-dependent kinase inhibitor 1A (CDKN1A);
- histone cluster 1, H2bf (HIST1H2BF);
- histone cluster 1, H1b (HIST1H1B);
- jade family PHD finger 1 (JADE1);
- KIAA0125;
- cholinergic receptor, nicotinic alpha 5 (CHRNA5);
- chromatin assembly factor 1, subunit B (p60)/MORC family CW-type zinc finger 3 (CHAF1B/MORC3);
- sel-1 suppressor of lin-12-like 3 (SEL1L3);
- structure specific recognition protein 1 (SSRP1);
- forkhead box Ml (FOXM1);
- lamin B1 (LMNB1);
- histone cluster 1, H2ak (HIST1H2AK);
- centromere protein A (CENPA);
- non-SMC condensin I complex subunit H (NCAPH);
- histone cluster 1, H2bb (HIST1H2BB);
- ATPase, H+ transporting, lysosomal 56/58 kDa, V1 subunit B2 (ATP6V1B2);
- TNF receptor-associated protein 1 (TRAP1);
- phosphoribosylformylglycinamidine synthase (PFAS);
- transmembrane protein 97 (TMEM97);
- 24-dehydrocholesterol reductase (DHCR24);
- ferritin, heavy polypeptide 1 (FTH1);
- histone cluster 1, H2ae (HIST1H2AE);
- NAD(P)H dehydrogenase, quinone 1 (NQO1);
- and CD44.
51 more elements
An in vitro method for measuring biomarkers for human skin sensitizers comprising the steps of:
- a) exposing a population of dendritic cells or a population of dendritic-like cells to a test agent;
- and
- b) measuring in the exposed cells of step a) the expression of nucleic acid molecules encoding each of the following 51 biomarkers for human skin sensitizers:
- histone cluster 1, H2bm (HIST1H2BM);
- histone cluster 1, H4b (HIST1H4B);
- histone cluster 1, Hid (HIST1H1D);
- phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase (PAICS);
- histone cluster 1, H4d (HIST1H4D);
- histone cluster 1, H2a1/histone cluster 1, H2bn (HIST1H2AL/HIST1H2BN);
- polo-like kinase 1 (PLK1);
- phosphoglycerate dehydrogenase (PHGDH);
- minichromosome maintenance complex component 2 (MCM2);
- minichromosome maintenance complex component 7 (MCM7);
- CD53;
- kinesin family member C1 (KIFC1);
- WEE1 G2 checkpoint kinase (WEE1);
- thymopoietin (TMPO);
- minichromosome maintenance complex component 4 (MCM4);
- proline/serine-rich coiled-coil 1 (PSRC1);
- ring finger protein 149 (RNF149);
- minichromosome maintenance complex component 6 (MCM6);
- minichromosome maintenance complex component 5 (MCM5);
- Fanconi anemia complementation group A (FANCA);
- carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase (CAD);
- MRT4 homolog, ribosome maturation factor (MRTO4);
- target of EGR1, member 1 (TOE1);
- cell division cycle 20 (CDC20);
- peptidase M20 domain containing 2 (PM20D2);
- NmrA-like family domain containing 1 pseudogene (LOC344887);
- uracil DNA glycosylase (UNG);
- cyclin-dependent kinase inhibitor 1A (CDKN1A);
- histone cluster 1, H2bf (HIST1H2BF);
- histone cluster 1, H1b (HIST1H1B);
- jade family PHD finger 1 (JADE1);
- KIAA0125;
- cholinergic receptor, nicotinic alpha 5 (CHRNA5);
- chromatin assembly factor 1, subunit B (p60)/MORC family CW-type zinc finger 3 (CHAF1B/MORC3);
- sel-1 suppressor of lin-12-like 3 (SEL1L3);
- structure specific recognition protein 1 (SSRP1);
- forkhead box Ml (FOXM1);
- lamin B1 (LMNB1);
- histone cluster 1, H2ak (HIST1H2AK);
- centromere protein A (CENPA);
- non-SMC condensin I complex subunit H (NCAPH);
- histone cluster 1, H2bb (HIST1H2BB);
- ATPase, H+ transporting, lysosomal 56/58 kDa, V1 subunit B2 (ATP6V1B2);
- TNF receptor-associated protein 1 (TRAP1);
- phosphoribosylformylglycinamidine synthase (PFAS);
- transmembrane protein 97 (TMEM97);
- 24-dehydrocholesterol reductase (DHCR24);
- ferritin, heavy polypeptide 1 (FTH1);
- histone cluster 1, H2ae (HIST1H2AE);
- NAD(P)H dehydrogenase, quinone 1 (NQO1);
- and CD44,
- wherein step b) is performed using an array comprising binding moieties, wherein the binding moieties consist of different binding moieties each capable of binding selectively to a nucleic acid molecule encoding one of the 51 biomarkers for human skin sensitizers.
52 more elements
Dependencies are inferred from the claim text.