User interface configured to facilitate user annotation for instance segmentation within biological samples

A system, comprising:

• a computing system, comprising:
• at least one first processor;
• and
• a first non-transitory computer readable medium communicatively coupled to the at least one first processor, the first non-transitory computer readable medium having stored thereon computer software comprising a first set of instructions that, when executed by the at least one first processor, causes the computing system to:
• generate a user interface configured to collect training data using at least one of full annotation or partial annotation of objects of interest within images of biological samples;
• display, within a display portion of the user interface, a first image comprising a field of view (“FOV”) of a first biological sample;
• receive, from a user via the user interface, a first user input that indicates a presence or location of each of a first plurality of objects of interest contained within the first image displayed in the display portion of the user interface;
• generate a border around each of the first plurality of objects of interest, based at least in part on a location for each of the first plurality of objects within the first image identified by the first user input and based at least in part on analysis of pixels in or around the corresponding location using an algorithm;
• and
• generate at least one of a second image or an annotation dataset based on the first image, the second image comprising data regarding location of each of the first plurality of objects of interest within the first image based on the received first user input and the generated border around each of the first plurality of objects of interest identified by the received first user input, the annotation dataset comprising at least one of pixel location data or coordinate data for each of the first plurality of objects within the first image based on the first user input and the generated border around each of the first plurality of objects of interest identified by the received first user input.