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US 11,091,799 B2Granted
Amplification with primers of limited nucleotide composition
AssigneeAtila Biosystems, Inc.
InventorsYouxiang Wang, Zhijie Yang, Xin Chen
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Abstract
The invention provides methods of amplification from a single primer or a pair of forward and reverse primers of limited nucleotide composition. Limited nucleotide composition means that the primers are underrepresented in at least one nucleotide type. Such primers have much reduced capacity to prime from each other or to extend initiated by mispriming from other than at their intended primer binding sites in a target nucleic acid.
Claims44
A method of amplifying a predetermined segment of a target nucleic acid comprising:
- contacting a sample comprising a target nucleic acid with forward and reverse primers;
- and
- conducting an amplification reaction wherein an amplification product of the predetermined segment of the target nucleic acid is formed by extension of the forward and reverse primers with the target nucleic acid serving as a template;
- wherein
- the primers are underrepresented in one or more of the four standard nucleotide types, the underrepresented nucleotide type(s) being the same in the primers, in each primer, the underrepresented nucleotide type(s) being present at two or fewer internal positions and/or the 5′ end position;
- and where the primers are not random primers in which most or all primer positions are occupied by degenerate selections of nucleotides varying between the primers, and
- wherein the method is performed in multiplex with one or more further pairs of the forward and reverse primers forming amplification products of one or more further predetermined segments, the underrepresented nucleotide type(s) being the same for each of the one or more further pairs, and in each primer of each pair, as the underrepresented nucleotide type(s) in the forward and reverse primers, the underrepresented nucleotide type(s) being present at two or fewer internal positions and/or the 5′ end position in each primer of the one or more further pairs.
4 more elements
Dependencies are inferred from the claim text.