# US 11,028,384 B2 · Pyruvate carboxylase and pyruvate carboxylase-encoding DNA, plasmid containing said DNA and microorganism for the production thereof, and methods for the production of products the biosynthesis of which includes oxaloacetate as precursor, and chromosome

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- Number: US 11,028,384 B2
- Document ID: US11028384B2
- Status: Granted
- Kind: B2
- Application number: 16/606,230
- Filed: 2018-04-13
- Published: 2020-02-20
- Granted: 2021-06-08
- Earliest claimed: 2017-05-18
- Assignees: Forschungszentrum Juelich GmbH
- Applicants: Forschungszentrum Juelich GmbH
- Inventors: Maike Kortmann; Meike Baumgart; Michael Bott
- Web page: https://patentgrep.com/patent/US11028384B2

## CPC

- C12N 9/93: {Ligases (6)}
- C12N 15/63: Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N 1/205: Bacterial isolates
- C12N 9/1217: {Phosphotransferases with a carboxyl group as acceptor (2.7.2)}
- C12N 15/52: Genes encoding for enzymes or proenzymes
- C12N 15/74: Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
- C12P 21/00: Preparation of peptides or proteins (single cell protein C12N1/00)
- C12Y 604/01001: Pyruvate carboxylase (6.4.1.1)
- C12R 2001/15: Corynebacterium
- C12N: MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA (microbiological testing media C12Q1/00)
- C12P: FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE {(brewing of beer C12C; producing vinegar C12J; producing specific peptides or proteins C07K; producing enzymes C12N9/00; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification C12N15/00; measuring or testing processes involving enzymes or microorganisms C12Q; measuring or testing processes involving nucleic acid amplification reactions C12Q1/6844; fermentation processes to form a food composition, A21 or A23; compounds in general, see the relevant compound class, e.g. C01, C07)}
- C12Y: ENZYMES
- C12R: INDEXING SCHEME ASSOCIATED WITH SUBCLASSES C12C - C12Q, RELATING TO MICROORGANISMS

## Abstract

A DNA sequence that includes at least 70% identity with respect to SEQ ID NO: 1 and further includes a triplet at position 1027-1029 that codes for alanine.

## Claims

### Claim 1

An isolated DNA sequence encoding a pyruvate carboxylase, comprising:
at least 97% identity with respect to SEQ ID NO: 1,
wherein a triplet at position 1027-1029 codes for alanine.

### Claim 2 (depends on 1)

The DNA sequence according to claim 1, wherein the DNA has identity of at least 99% with respect to SEQ ID NO: 1.

### Claim 3 (depends on 1)

The DNA sequence according to claim 1, wherein the DNA sequence is a DNA according to SEQ ID NO: 1.

### Claim 4 (depends on 1)

The DNA sequence according to claim 1, further comprising, at position 3034-3036, a triplet which encodes for serine.

### Claim 5 (depends on 4)

The DNA sequence according to claim 4, wherein the DNA has identity of at least 97% with respect to SEQ ID NO: 2.

### Claim 6 (depends on 4)

The DNA sequence according to claim 4, wherein the DNA is according to SEQ ID NO: 2.

### Claim 7

A pyruvate carboxylase having at least 97% identity with respect to a pyruvate carboxylase according to SEQ ID NO: 3, wherein alanine is present at position 343.

### Claim 8 (depends on 7)

The pyruvate carboxylase according to claim 7, wherein the pyruvate carboxylase has identity of at least 99% with respect to the pyruvate carboxylase according to SEQ ID NO: 3.

### Claim 9 (depends on 7)

The pyruvate carboxylase according to claim 7, wherein the pyruvate carboxylase is a pyruvate carboxylase according to SEQ ID NO: 3.

### Claim 10 (depends on 7)

The pyruvate carboxylase according to claim 7, further comprising serine at position 1012.

### Claim 11 (depends on 10)

The pyruvate carboxylase according to claim 10, wherein the pyruvate carboxylase has identity of at least 97% with respect to the pyruvate carboxylase according to SEQ ID NO: 4.

### Claim 12 (depends on 10)

The pyruvate carboxylase according to claim 10, wherein the pyruvate carboxylase is a pyruvate carboxylase according to SEQ ID NO: 4.

### Claim 13 (depends on 1)

A vector, wherein the vector comprises a DNA sequence according to claim 1.

### Claim 14 (depends on 13)

The vector according to claim 13, wherein the vector is a plasmid.

### Claim 15 (depends on 1)

A microorganism, wherein the microorganism comprises a DNA sequence according to claim 1.

### Claim 16 (depends on 15)

The microorganism according to claim 15, wherein the microorganism comprises a vector.

### Claim 17 (depends on 15)

The microorganism according to claim 15, wherein the microorganism is a microorganism selected from the group consisting of the genera Corynebacterium, Brevibacterium, Bacillus, Lactobacillus, Lactococcus, Candida, Pichia, Kluyveromyces, Saccharomyces, Escherichia, Zymomonas, Yarrowia, Methylobacterium, Ralstonia, Vibrio, and Clostridium.

### Claim 18 (depends on 1)

A method for the production of products whose biosynthesis includes oxaloacetate as a precursor, the method comprising:
fermenting a microorganism containing a DNA sequence according to claim 1, which forms a pyruvate carboxylase, and
performing an enrichment of the products in a medium or in cells.

### Claim 19 (depends on 18)

The method according to claim 18, wherein a product is isolated.

### Claim 20 (depends on 18)

The method according to claim 18, wherein a species from the group consisting of the genera Corynebacterium, Brevibacterium, Bacillus, Lactobacillus, Lactococcus, Candida, Pichia, Kluyveromyces, Saccharomyces, Escherichia, Zymomonas, Yarrowia, Methylobacterium, Ralstonia, Vibrio, and Clostridium is used as the microorganism.

### Claim 21 (depends on 18)

The method according to claim 18, wherein an amino acid of the aspartate family is produced.

### Claim 22 (depends on 21)

The method according to claim 21, wherein L-lysine, L-aspartate, L-asparagine, L-threonine, L-isoleucine, or L-methionine is produced.

### Claim 23 (depends on 18)

The method according to claim 18, wherein substances from the glutamate family of amino acids are produced, such as L-glutamate, glutamine, L-arginine, L-proline, L-citrulline, or L-ornithine; intermediates of the citrate cycle, such as malate, fumarate, succinate, malate, fumarate citrate, isocitrate, or 2-oxoglutarate; diamines, such as diaminopentane or diaminobutane; as well as further metabolites prepared from oxaloacetate, such itaconate, ectoine, gamma aminobutyrate, butanol, 1-propanol, L-citrulline, L-ornithine, D-arginine, or 4-hydroxyproline.

### Claim 24 (depends on 18)

The method according to claim 18, wherein the DNA sequence is more strongly expressed.

### Claim 25 (depends on 1)

A chromosome including the DNA sequence according to claim 1.
