# US 10,767,212 B2 · Method of screening compounds

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- Number: US 10,767,212 B2
- Document ID: US10767212B2
- Status: Granted
- Kind: B2
- Application number: 15/714,885
- Filed: 2017-09-25
- Published: 2018-04-12
- Granted: 2020-09-08
- Earliest claimed: 2016-09-23
- Assignees: Cornell University
- Applicants: Cornell University
- Inventors: Richard Cerione; Jon W Erickson; Clint A Stalnecker
- Web page: https://patentgrep.com/patent/US10767212B2

## CPC

- C12Q 1/34: involving hydrolase
- C12N 9/80: acting on amide bonds in linear amides {(3.5.1)}
- C12Y 305/01002: Glutaminase (3.5.1.2)
- G01N 2500/04: Screening involving studying the effect of compounds C directly on molecule A (e.g. C are potential ligands for a receptor A, or potential substrates for an enzyme A)
- G01N 2500/20: cell-free systems
- C12Q: MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS (immunoassay G01N33/53); COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12N: MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA (microbiological testing media C12Q1/00)
- C12Y: ENZYMES
- G01N: INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES (measuring or testing apparatus or processes other than immunoassay, involving enzymes or microorganisms C12M, C12Q)

## Abstract

The present technology relates to kidney-type glutaminase (GLS) proteins that have a phenylalanine to tryptophan substitution at the position corresponding to residue 322 of human glutaminase C (GAC), and methods of using such proteins to screen for compounds that bind to the activation loop of GLS and/or modulate glutaminase activity of GLS.

## Claims

### Claim 1

A method of screening for compounds that bind to the activation loop of kidney-type glutaminase (“GLS”) protein, said method comprising:
contacting GLS protein, wherein the GLS protein comprises an activation loop and comprises a phenylalanine to tryptophan substitution at the residue corresponding to position 322 of SEQ ID NO: 2, with a test compound, wherein the test compound is a compound that potentially binds to the activation loop, to permit binding between the activation loop and the test compound;
detecting fluorescence of the substituted tryptophan in the presence of the test compound;
comparing the detected fluorescence to fluorescence of a control; and
identifying, based on said comparing, that the test compound is a compound that binds to the activation loop of GLS, wherein a change in fluorescence relative to the control indicates that the test compound binds to the activation loop.

### Claim 2 (depends on 1)

The method according to claim 1, wherein said contacting is carried out in vitro.

### Claim 3 (depends on 1)

The method according to claim 1, wherein said contacting comprises incubating the protein with the test compound for ten to thirty minutes.

### Claim 4 (depends on 1)

The method according to claim 1, wherein the test compound is selected from the group consisting of bis-thiadiazoles, small inorganic anions, and negatively-charged metabolites.

### Claim 5 (depends on 1)

The method according to claim 1, wherein said comparing comprises:
(a) calculating the binding affinity between the test compound and the protein from the detected fluorescence and
(b) comparing the calculated binding affinity to that of the control.

### Claim 6 (depends on 1)

The method according to claim 1, wherein the fluorescence of the control is the fluorescence of the substituted tryptophan in the absence of the test compound.

### Claim 7 (depends on 1)

The method according to claim 1, wherein the control is a second kidney-type glutaminase (“GLS”) protein comprising a phenylalanine to tryptophan substitution at the residue corresponding to position 322 of SEQ ID NO: 2 and the fluorescence of the control is the fluorescence of the substituted tryptophan of the second GLS protein detected in the absence of the test compound.

### Claim 8 (depends on 1)

The method according to claim 1 further comprising:
contacting kidney-type glutaminase (“GLS”) protein with glutamine in the presence of the test compound under conditions effective for the protein, if active, to convert glutamine to glutamate;
measuring production of glutamate, if any, following said contacting with glutamine;
comparing the measured glutamate production to glutamate production of a second control; and
further identifying, based on said comparing glutamate production, that the test compound is a modulator of glutaminase activity of GLS, wherein a change in glutamate production relative to the second control indicates that the test compound modulates glutaminase activity of GLS.

### Claim 9 (depends on 1)

The method according to claim 1 further comprising identifying a compound that also modulates glutaminase activity of kidney-type glutaminase (“GLS”) protein, said further method comprising:
selecting a test compound identified as being a compound that binds to the activation loop according to said identifying step;
contacting GLS protein with glutamine in the presence of the selected test compound under conditions effective for the protein, if active, to convert glutamine to glutamate;
measuring production of glutamate, if any, following said contacting with glutamine;
comparing the measured glutamate production to glutamate production of a second control; and
further identifying, based on said comparing glutamate production, that the selected test compound is also a modulator of glutaminase activity of GLS, wherein a change in glutamate production relative to the second control indicates that the selected test compound also modulates glutaminase activity of GLS.
