Degradation of tripartite motif-containing protein 24 (TRIM24) by conjugation of TRIM24 inhibitors with E3 ligase ligand and methods of use
AssigneeDana-Farber Cancer Institute, Inc.
InventorsJames Bradner, Dennis Buckley, Lara Gechijian
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Abstract
The present application provides bifunctional compounds of Formula Ia or Ib: or a pharmaceutically acceptable salt, hydrate, solvate, prodrug, stereoisomer, or tautomer thereof, which act as protein degradation inducing moieties for tripartite motif-containing 24 (TRIM24). The present application also relates to methods for the targeted degradation of TRIM24 through the use of the bifunctional compounds that link a ubiquitin ligase-binding moiety to a ligand that is capable of binding to TRIM24 which can be utilized in the treatment of disorders modulated by TRIM24.
Claims16
A bifunctional compound of Formula X:
- wherein:
- the Targeting Ligand is capable of binding to TRIM24;
- the Linker is a group that covalently binds to the Targeting Ligand and the Degron;
- and
- the Degron is capable of binding to a ubiquitin ligase,
- wherein the Targeting Ligand is of Formula TL-I:
- or an enantiomer, diastereomer, stereoisomer, or pharmaceutically acceptable salt thereof, wherein:
- A is phenyl or 5- or 6-membered heteroaryl containing 1 or 2 heteroatoms selected from N and S, wherein the phenyl or heteroaryl is optionally substituted with 1 to 3 R5;
- G is phenyl or 5- or 6-membered heteroaryl containing 1 or 2 heteroatoms selected from N and S, wherein the phenyl or heteroaryl is optionally substituted with 1 to 3 R6;
- X is S(O)t;
- Y is O or NR4;
- R1 is H, (C1-C4) alkyl, or (C1-C4) haloalkyl;
- R2 is H, (C1-C4) alkyl, or (C1-C4) haloalkyl;
- R3 is H, (C1-C4) alkyl, or (C1-C4) haloalkyl;
- R4 is H, (C1-C4) alkyl, or (C1-C4) haloalkyl;
- each R5 is independently (C1-C6) alkyl, (C1-C6) haloalkyl, (C1-C6) alkoxy, (C1-C6) haloalkoxy, halogen, OH, or NH2, wherein the alkyl or alkoxy is optionally substituted with one or more substituents selected from NR7R8, phenyl, and 5- or 6-membered heteroaryl containing 1 or 2 heteroatoms selected from N and S;
- each R6 is independently (C1-C6) alkyl, (C1-C6) haloalkyl, (C1-C6) alkoxy, (C1-C6) haloalkoxy, halogen, OH, or NH2, wherein the alkyl or alkoxy is optionally substituted with one or more substituents selected from NR7R8, phenyl, and 5- or 6-membered heteroaryl containing 1 or 2 heteroatoms selected from N and S;
- each R7 and R8 is independently H, (C1-C4) alkyl, or (C1-C4) haloalkyl;
- and
- t is 0, 1, or 2,
- wherein the Targeting Ligand is bonded to the Linker via attachment to A or G;
- wherein the Linker is of Formula L0:
- or an enantiomer, diastereomer, or stereoisomer thereof, wherein
- p1 is an integer selected from 0 to 12;
- p2 is an integer selected from 0 to 12;
- p3 is an integer selected from 1 to 6, or 0 when Q is Q1-(O)0-1-Q2;
- each W is independently absent, CH2, O, S, NH, or NR19;
- Z1 is absent, OCH2C(O)NH, OCH2C(O)NR19, C(O)NH, C(O)NR19, NHC(O), NR19C(O), C(O), CH2, O, NH, or NR19;
- each R19 is independently C1-C3 alkyl;
- and
- Q is absent, NHC(O)CH2, O(CH2)0-2, or Q1-(O)0-1-Q2;
- Q1 and Q2 are each independently absent, C1-C4 alkylenyl, cyclopropyl, cyclobutyl, cyclopentyl, phenyl, pyridinyl, pyrimidinyl, pyrazinyl, or 5- or 6-membered heterocyclyl containing 1 or 2 N,
- wherein the Linker is covalently bonded to the Degron via the
- next to Q, and covalently bonded to the Targeting Ligand via the
- next to Z1:
- wherein the Degron is of Formula D1, D2, or D3:
- or an enantiomer, diastereomer, or stereoisomer thereof, wherein:
- Y1 is a bond, (CH2)1-6, (CH2)0-6—O, (CH2)0-6—C(O)NR11, (CH2)0-6—NR11C(O), (CH2)0-6—NH, or (CH2)0-6—NR12;
- Z is C(O) or C(R13)2;
- R11 is H or C1-C6 alkyl;
- R12 is C1-C6 alkyl or C(O)—C1-C6 alkyl;
- each R13 is independently H or C1-C3 alkyl;
- each R14 is independently C1-C3 alkyl;
- R15 is H, deuterium, C1-C3 alkyl, F, or Cl;
- each R16 is independently halogen, OH, C1-C6 alkyl, or C1-C6 alkoxy;
- q is 0, 1, or 2;
- v is 0, 1, 2, or 3;
- each R17 is independently C1-C3 alkyl;
- q′ is 0, 1, 2, 3 or 4;
- R18 is H or C1-C3 alkyl;
- R20 is t-butyl or i-propyl;
- R21 is
- and bonded to the carbon atom marked with * with the nitrogen atom, or 5- or 6-membered heteroaryl containing 1 or 2 heteroatoms selected from N, O, and S;
- and
- R22 is H or C1-C3 alkyl,
- wherein the Degron is covalently bonded to the Linker via
Dependencies are inferred from the claim text.