# US 10,502,741 B2 · Means and methods for detecting activated MALT1 > Agents: this data is available as JSON from the patentgrep API and MCP server — see https://patentgrep.com/llms.txt - Number: US 10,502,741 B2 - Document ID: US10502741B2 - Status: Granted - Kind: B2 - Application number: 15/108,655 - Filed: 2015-01-20 - Published: 2016-11-10 - Granted: 2019-12-10 - Earliest claimed: 2014-01-21 - Assignees: Helmholtz Zentrum München Deutsches Forschungszentrum für Gesundheit und Umweld (GmbH); Technische Universität München - Applicants: Helmholtz Zentrum München Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH); Technische Universität München - Inventors: Daniel Krappmann; Andrea Eitelhuber; Steven Verhelst - Web page: https://patentgrep.com/patent/US10502741B2 ## CPC - G01N 33/573: for enzymes or isoenzymes - C12N 9/6472: {Cysteine endopeptidases (3.4.22)} - G01N 33/532: Production of labelled immunochemicals - C07K 2319/43: containing a FLAG-tag - C07K 2319/60: containing spectroscopic/fluorescent detection, e.g. green fluorescent protein [GFP] - G01N 2333/96466: Cysteine endopeptidases (3.4.22) - G01N 2800/00: Detection or diagnosis of diseases - G01N 2800/52: Predicting or monitoring the response to treatment, e.g. for selection of therapy based on assay results in personalised medicine; Prognosis - G01N: INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES (measuring or testing apparatus or processes other than immunoassay, involving enzymes or microorganisms C12M, C12Q) - C12N: MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA (microbiological testing media C12Q1/00) - C07K: PEPTIDES (peptides in foodstuffs A23; obtaining protein compositions for foodstuffs, working-up proteins for foodstuffs A23J; preparations for medicinal purposes A61K; peptides containing beta-lactam rings C07D; cyclic dipeptides not having in their molecule any other peptide link than those which form their ring, e.g. piperazine-2,5-diones, C07D; ergot alkaloids of the cyclic peptide type C07D519/02; macromolecular compounds having statistically distributed amino acid units in their molecules, i.e. when the preparation does not provide for a specific; but for a random sequence of the amino acid units, homopolyamides and block copolyamides derived from amino acids C08G69/00; macromolecular products derived from proteins C08H1/00; preparation of glue or gelatine C09H; single cell proteins, enzymes C12N; genetic engineering processes for obtaining peptides C12N15/00; compositions for measuring or testing processes involving enzymes C12Q; investigation or analysis of biological material G01N33/00) ## Abstract The present invention provides means and methods for selectively detecting activated MALT1 in a sample. Moreover, the present invention provides a method for diagnosing diseases, which are characterized by an increased MALT1 activity. Finally, the present invention provides methods for identifying patients which are amenable to treatment with a therapeutic agent capable of inhibiting MALT1 activity. ## Claims ### Claim 1 A method for the detection of activated Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (MALT1) in a test sample comprising the steps of: (a) contacting a test sample with a diagnostic inhibitor of MALT1 activity under conditions allowing the formation of a MALT1 complex of said diagnostic inhibitor and activated MALT1; and (b) detecting the MALT1 complex qualitatively and/or quantitatively by a first detection agent which binds to a first binding site on the MALT1 complex of (a), wherein said diagnostic inhibitor comprises the following covalently linked subunits: (i) a first subunit comprising at least one detectable label, (ii) a second subunit, wherein the second subunit is a tetrapeptide selected from the group consisting of LRSR (SEQ ID NO: 5), LVSR (SEQ ID NO: 7), FMSR (SEQ ID NO: 8), CLSR (SEQ ID NO: 9), GASR (SEQ ID NO: 10) or a pentapeptide comprising any of the tetrapeptides LRSR (SEQ ID NO: 5), LVSR (SEQ ID NO: 7), FMSR (SEQ ID NO: 8), CLSR (SEQ ID NO: 9) or GASR (SEQ ID NO: 10), capable of binding to the catalytic center of activated MALT1, and (iii) a third subunit comprising at least one moiety for linking the diagnostic inhibitor to activated MALT1, wherein the third subunit comprises AOMK wherein AOMK comprises a 2,6-dimethylphenyl group; wherein the first binding site is located on the diagnostic inhibitor; and wherein the method comprises qualitative and/or quantitative detection of activated MALT1 or the MALT1 complex by a second detection agent. ### Claim 2 (depends on 1) The method of claim 1, wherein the second detection agent binds to a second binding site on the MALT1 complex. ### Claim 3 (depends on 2) The method of claim 2, wherein the second detection agent comprises a MALT1 antibody or an antigen binding fragment of said antibody and a detectable label. ### Claim 4 (depends on 3) The method of claim 3, wherein the detectable label of the second detection agent is coupled to the MALT1 antibody or to an antibody which is capable of binding to said MALT1 antibody. ### Claim 5 (depends on 1) The method of claim 1, wherein the first detection agent is linked to a solid support. ### Claim 6 (depends on 1) The method of claim 1, wherein the first subunit of the diagnostic MALT1 inhibitor is or comprises a detectable label selected from the group consisting of biotin, glutathione, peptide comprising at least 6 histidines, glycosylated peptide, metalloprotein, metal, Co2+, Ni2+, Cu2+, and Zn2+, chromophore, fluorophore, radioisotope, Iodine125 and affinity tag. ### Claim 7 (depends on 1) The method of claim 1, wherein the first detection agent is selected from the group consisting of avidin, streptavidin, StrepTactin, HA, FLAG, GST or a functional fragment of GST, a peptide comprising at least 6 histidines, lectin and an antibody capable of binding to the detectable label. ### Claim 8 (depends on 1) The method of claim 1, wherein the second subunit of the diagnostic inhibitor is a tetrapeptide. ### Claim 9 (depends on 1) The method of claim 1, wherein the second subunit of the diagnostic inhibitor is a pentapeptide. ### Claim 10 (depends on 1) A method wherein said method is for detecting or diagnosing a disease or a predisposition for developing a disease, said disease being characterized by an increased amount of MALT1 or by an increased MALT1 activity, said method comprising the steps of: (a) detecting qualitatively and/or quantitatively, activated MALT1 of a test sample and of a reference sample by performing the method of claim 1; (b) comparing the amount of activated MALT1 in the test and the reference sample; and (c) concluding from the observation of an increased amount of activated MALT1 in the test sample in comparison to the reference sample that the subject from which the test sample originates is affected from the disease or has a predisposition for the disease. ### Claim 11 (depends on 10) The method of claim 10, wherein the disease is a tumor or cancer, an autoimmune disease or an inflammatory disease, selected from the group consisting of multiple sclerosis, rheumatoid arthritis, a lymphoma, MALT lymphoma, a diffuse large B-cell lymphoma of the subtype ABC-DLBCL and a mantle cell lymphoma. ### Claim 12 (depends on 1) A method wherein said method is for detecting the response or sensitivity of activated MALT1 to a therapeutic agent capable of inhibiting MALT1 activity, said method comprising the steps of: (a) detecting qualitatively and/or quantitatively, activated MALT1 of a test sample and of a reference sample by performing the method of claim 1, wherein the test sample is pre-incubated with the therapeutic agent; (b) comparing the amount of activated MALT1 in the test and the reference sample; and (c) concluding from a reduced detectable amount of activated MALT1 in the test sample that the subject is sensitive to the therapeutic agent. ### Claim 13 (depends on 1) A method wherein said method is for monitoring a subject's response to a medication for treating a disease characterized by an increased MALT1 activity, comprising the steps of: (a) detecting qualitatively and/or quantitatively, activated MALT1 of a test sample and of a reference sample both originating from the same subject by performing the method of claim 1, wherein the test sample is a sample obtained from the subject after treatment or after a treatment step of the subject with a therapeutic agent and the reference sample is obtained before the treatment or the treatment step of the subject with the therapeutic agent; (b) comparing the amount of activated MALT1 in the test sample and the reference sample; and (c) concluding from a reduced detectable amount of activated MALT1 in the test sample in comparison with the reference sample whether the therapeutic agent affects a MALT1 response. ### Claim 14 (depends on 1) The method of claim 1, wherein the method comprises a synthesis of the diagnostic inhibitor and where the synthesis comprises a step wherein tetrabutylammonium fluoride is used as a base. ### Claim 15 (depends on 1) The method of claim 1, wherein the second subunit is LRSR. ### Claim 16 (depends on 1) The method of claim 1, wherein the second subunit is LRSR and wherein the AOMK comprises a 2,6-dimethylphenyl group.