Method and system for characterizing allergy-related conditions associated with microorganisms

A method for characterizing a food-related allergy condition, the method comprising:

• collecting samples from a set of users, wherein the samples comprise microorganism nucleic acids associated with the food-related allergy condition;
• generating a microorganism sequence dataset for the set of users based on the microorganism nucleic acids;
• determining microbiome composition diversity features and microbiome functional diversity features for the set of users based on the microorganism sequence dataset;
• collecting supplementary data associated with the food-related allergy condition for the set of users;
• transforming the supplementary data, the microbiome composition diversity features, and the microbiome functional diversity features into an allergy-related characterization model for the food-related allergy condition;
• generating a food-related allergy characterization for a user based on the allergy-related characterization model;
• and
• providing a therapy to the user for the food-related allergy condition based on the food-related allergy characterization.