Method and system for microbiome analysis

A method for processing a nucleic acid sample, comprising genetic content of a microorganism ecosystem, from an individual, the method comprising:

• providing a sampling kit to the individual at a remote location, the sampling kit including a sample container having a pre-process reagent component and configured to receive a sample from a collection site of the individual;
• from the remote location, receiving the sample container with the sample from the collection site of the individual;
• generating a solution upon combination of the sample with a first substrate set having a first primer type, associated with a first nucleic acid marker of a first microorganism portion of the sample and isolated to the first substrate set, and a second substrate set having a second primer type associated with a second nucleic acid marker of a second microorganism portion of the sample and isolated to the second substrate set;
• simultaneously amplifying genetic content associated with the first nucleic acid marker by way of the first substrate set and genetic content associated with the second nucleic acid marker by way of the second substrate set in a process chamber, for facilitating sequencing with a next generation sequencing platform;
• generating a microbiome sequence dataset based upon sequencing, with the next generation sequencing platform, genetic content associated with the first and the second nucleic acid markers;
• and
• at one or more computing devices, generating an analysis characterizing the first microorganism portion and the second microorganism portion based upon the microbiome sequence dataset derived from the individual.