Silane mixtures
AssigneeAffymetrix, Inc.
InventorsGlenn H. McGall, Robert G. Kuimelis
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Abstract
Silanation compositions containing a mixture of two or more silanation reagents, where at least one silanation reagent includes a functional group capable of supporting polymer synthesis and at least one silanation reagent includes no functional group capable of supporting polymer synthesis are useful in modulating the active site density and hydrolytic stability of a surface. These compositions are particularly useful in silanating a surface prior to preparation of a polymer array and provide for increased hybridization results.
Claims30
A method of preparing an array of monomers or polymers comprising:
- providing a substrate including a silica surface or other silicon oxide-containing surface thereon;
- contacting the silica or the other silicon oxide-containing surface of the substrate with a silanation composition comprising a mixture of a first compound and a second compound such that the first and the second compounds are covalently attached to the surface to form a silanation coating;
- the first compound comprising a trialkoxy silyl group and a functional group, wherein said functional group is capable of supporting polymer synthesis and is selected from the group consisting of hydroxyl, amino and carboxyl;
- the first compound being selected from the group consisting of N-(3-(triethoxysilyl)-propyl)-4-hydroxybutyrarnide;
- N,N-bis(2-hydroxyethyl)-3-aminopropyltriethoxysilane;
- 3-((2 hydroxyethyl)methylamino)propyl-trimethoxysilane;
- N-(2-hydroxy-ethyl)-N,N-bis(trimethoxy-silylpropyl)-amine;
- 1,2-bis((2-hydroxyethyl)-(3 trimethoxysilylpropyl)aminoethane;
- 3-acetoxy-propyltrimethoxysilane;
- (trimethoxysilyloxy)-(C3-C12-alkyl)-(triethoxysilane);
- and 3-glycidoxypropyltriethoxysilane;
- and
- the second compound comprising a trialkoxy silyl group and wherein the second compound in the mixture does not include the functional group of the first compound;
- the second compound being selected from the group consisting of 1,2-bis(trimethoxysilyl)-ethane;
- 1,3-bis(trimethoxysilyl)propane;
- 1,6-bis(trimethoxysilyl)hexane;
- 3-(N,N-dimethyl-amino)-propyl-trimethoxysilane;
- and N,N-bis(3-trimethoxysilylpropyl)-methylamine;
- wherein the molar ratio of the first compound to the second compound in the mixture ranges from about 1:50 to 1:500;
- and wherein the mixture of the first and second compounds in the silanation coating imparts increased hydrolytic stability to the coating;
- protecting the functional group capable of supporting polymer synthesis of the first compound with a protecting group or reacting the functional group capable of supporting polymer synthesis of the first compound with a compound having a reactive group protected by a protecting group to provide the first compound of the silanation coating protected with the protecting group;
- removing the protecting group of the first compound in selected regions of the silanation coating to provide an exposed functional or reactive group;
- reacting said exposed functional or reactive group with the monomer or the polymer whereby the monomer or the polymer is coupled to the exposed group;
- and
- repeating the steps of removing and reacting to produce the array of monomers or polymers.
Dependencies are inferred from the claim text.