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US 10,041,114 B2Granted
Targeted sequencing of biomolecules by pulling through a liquid-liquid interface with an atomic force microscope
AssigneeInternational Business Machines Corporation
InventorsVenkat K. Balagurusamy, Stanislav Polonsky
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Abstract
A mechanism is provided for sequencing a biopolymer. The biopolymer is traversed from a first medium to a second medium. The biopolymer includes bases. As the biopolymer traverses from the first medium to the second medium, different forces are measured corresponding to each of the bases. The bases are distinguished from one another according to the different measured forces which are measured for each of the bases.
Claims17
An apparatus for sequencing a polymer, the apparatus comprising:
- a computer comprising a processor for executing software;
- a chamber filled with a first medium and a second medium on top of the first medium, such that the polymer is associated with the first and second mediums, the first medium comprising water, the second medium comprising oil;
- an atomic force microscope coupled to the computer;
- a tip of the atomic force microscope attached to one end of the polymer of the blocks;
- and
- an opposite end of the polymer of the blocks attached to a bottom surface of the chamber in the first medium comprising the water;
- wherein the atomic force microscope, via the computer, is operable to:
- traverse the polymer from the first medium to the second medium, wherein the polymer comprises blocks;
- as the polymer traverses from the first medium to the second medium, measure different measured forces corresponding to each of the blocks;
- and
- distinguish the blocks from one another according to the different measured forces measured for each of the blocks as each of the blocks traverses from the first medium to the second medium.
8 more elements
Dependencies are inferred from the claim text.